PH01000608G0310's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G19270 : 6.90E-18
Blast annotation: -
2.Location
Scaffold: PH01000608
Strand: -
| Region | Start | End |
| gene | 163498 | 165725 |
| mRNA | 163498 | 165725 |
| exon | 163498 | 163945 |
| exon | 164372 | 165725 |
| CDS | 163874 | 163945 |
| CDS | 164372 | 165502 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001461 | HMG Transcription_Regulator(from iTAK) base-excision repair, 4 iron, 4 sulfur cluster binding, endonuclease activity, |
| coexpression network | CFinderM001615 | Alanine,_aspartate_and_glutamate_metabolism Nitrogen_metabolism 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, exocyst, (1->3)-beta-D-glucan biosynthetic process, exocytosis, cellular amino acid metabolic process, Arginine_and_proline_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.