PH01000610G0210's details annotation
1.Annotation
ICBR annotation: OsFBK25 - F-box domain and kelch repeat containing protein, expressed
Blast result AT3G59940 : 3.70E-29
Blast annotation: Galactose oxidase/kelch repeat superfamily protein
2.Location
Scaffold: PH01000610
Strand: +
| Region | Start | End |
| gene | 148744 | 150527 |
| mRNA | 148744 | 150527 |
| exon | 148744 | 149269 |
| exon | 149319 | 150527 |
| CDS | 148916 | 149269 |
| CDS | 149319 | 149867 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000308 | ubiquitin-dependent protein catabolic process, ubiquitin thiolesterase activity, |
| coexpression network | CFinderM000448 | COPII vesicle coat, Protein_processing_in_endoplasmic_reticulum Protein_export |
| coexpression network | CFinderM000449 | glycerol ether metabolic process, cell redox homeostasis, |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.