Annotation of co-expression genes

PH01000612G0220's details annotation

1.Annotation

ICBR annotation: D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed

Blast result AT1G17745 : 9.00E-120
Blast annotation: D-3-phosphoglycerate dehydrogenase

2.Location

Scaffold: PH01000612
Strand: -

RegionStartEnd
gene169434175330
mRNA169434175330
exon169434169914
exon170557170640
exon170737170847
exon170940171316
exon174558175330
CDS169711169914
CDS170557170640
CDS170737170847
CDS170940171316
CDS174558175113

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00389.292-Hacid_dh64373
PF02826.182-Hacid_dh_C166341
PF01842.24ACT376433

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Methane metabolismD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]ko00680K00058
280 Glycine, serine and threonine metabolismD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]K00058

10.Gene Ontology

GO AccessionGO Annotation
GO:0004617phosphoglycerate dehydrogenase activity
GO:0006564L-serine biosynthetic process
GO:0008152metabolic process
GO:0016597amino acid binding
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0048037cofactor binding
GO:0051287NAD binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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