PH01000612G0260's details annotation
1.Annotation
ICBR annotation: SGT1 protein, putative, expressed
Blast result AT5G65490 : 9.00E-124
Blast annotation: -
2.Location
Scaffold: PH01000612
Strand: -
| Region | Start | End |
| gene | 214818 | 219200 |
| mRNA | 214818 | 219200 |
| exon | 214818 | 215217 |
| exon | 215897 | 216036 |
| exon | 217314 | 217640 |
| exon | 218010 | 219200 |
| CDS | 215207 | 215217 |
| CDS | 215897 | 216036 |
| CDS | 217314 | 217640 |
| CDS | 218010 | 218902 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07093.10 | SGT1 | 17 | 450 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.