PH01000614G0080's details annotation
1.Annotation
ICBR annotation: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed
Blast result AT4G34430 : 6.00E-118
Blast annotation: DNA-binding family protein
2.Location
Scaffold: PH01000614
Strand: -
| Region | Start | End |
| gene | 53158 | 60862 |
| mRNA | 53158 | 60862 |
| exon | 53158 | 53843 |
| exon | 53932 | 54128 |
| exon | 54875 | 55060 |
| exon | 55148 | 55422 |
| exon | 55497 | 55663 |
| exon | 55786 | 56418 |
| exon | 57215 | 57756 |
| exon | 58937 | 59116 |
| exon | 60085 | 60862 |
| CDS | 53598 | 53843 |
| CDS | 53932 | 54128 |
| CDS | 54875 | 55060 |
| CDS | 55148 | 55422 |
| CDS | 55497 | 55663 |
| CDS | 55786 | 56418 |
| CDS | 57215 | 57756 |
| CDS | 58937 | 59116 |
| CDS | 60085 | 60496 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000559 | regulation of cell shape, cell division, Ino80_complex Aminoacyl-tRNA_biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity, chromatin binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04433.16 | SWIRM | 197 | 279 |
| PF00569.16 | ZZ | 358 | 393 |
| PF00249.30 | Myb_DNA-binding | 417 | 459 |
| PF16495.4 | SWIRM-assoc_1 | 832 | 910 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.