PH01000615G0020's details annotation
1.Annotation
ICBR annotation: expansin precursor, putative, expressed
Blast result AT1G20190 : 2.00E-106
Blast annotation: expansin 11
2.Location
Scaffold: PH01000615
Strand: -
| Region | Start | End |
| gene | 31618 | 34284 |
| mRNA | 31618 | 34284 |
| exon | 31618 | 33592 |
| exon | 33703 | 34024 |
| exon | 34094 | 34284 |
| CDS | 33283 | 33592 |
| CDS | 33703 | 34024 |
| CDS | 34094 | 34241 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000614 | protein processing, ATP biosynthetic process, ATP_catabolic_process plant-type cell wall organization, GH28 Glycoside_Hydrolases extracellular region, integral to membrane, Phosphatidylinositol_signaling_system Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03330.17 | DPBB_1 | 67 | 155 |
| PF01357.20 | Pollen_allerg_1 | 166 | 243 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005576 | extracellular region |
| GO:0009664 | plant-type cell wall organization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.