Annotation of co-expression genes

PH01000615G0340's details annotation

1.Annotation

ICBR annotation: DSBA-like thioredoxin domain containing protein, expressed

Blast result AT1G76020 : 7.80E-51
Blast annotation: Thioredoxin superfamily protein

2.Location

Scaffold: PH01000615
Strand: -

RegionStartEnd
gene266481272156
mRNA266481272156
exon266481266821
exon266926267090
exon267994268036
exon271554272156
CDS266690266821
CDS266926267090
CDS267994268036
CDS271554271819

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM0001823-deoxy-7-phosphoheptulonate synthase activity,
aromatic amino acid family biosynthetic process,
Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
sphingolipid metabolic process,
glucosylceramide catabolic process,
GH116 Glycoside_Hydrolases
Flavonoid_biosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13462.5Thioredoxin_447211

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.