Annotation of co-expression genes

PH01000617G0620's details annotation

1.Annotation

ICBR annotation: tetratricopeptide repeat domain containing protein, expressed

Blast result AT2G43040 : 0.00E+00
Blast annotation: tetratricopeptide repeat (TPR)-containing protein

2.Location

Scaffold: PH01000617
Strand: +

RegionStartEnd
gene407596413284
mRNA407596413284
exon407596407992
exon409635409890
exon409966411176
exon411560411704
exon411967413284
CDS407753407992
CDS409635409890
CDS409966411176
CDS411560411704
CDS411967412283

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000922Endocytosis
hydrolase_activity,_acting_on_acid_anhydrides
coexpression networkCFinderM001397GT4 GlycosylTransferases
coexpression networkCFinderM001631Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13432.5TPR_16458517
PF13432.5TPR_16670707

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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