Annotation of co-expression genes

PH01000618G0900's details annotation

1.Annotation

ICBR annotation: MYB family transcription factor, putative, expressed

Blast result AT5G41020 : 2.00E-51
Blast annotation: myb family transcription factor

2.Location

Scaffold: PH01000618
Strand: +

RegionStartEnd
gene523828529608
mRNA523828529608
exon523828525321
exon525980526064
exon526312526423
exon527023527135
exon527954528051
exon528775528968
exon529254529608
CDS524278525321
CDS525980526064
CDS526312526423
CDS527023527135
CDS527954528051
CDS528775528968
CDS529254529356

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000242metallopeptidase activity,
apoptotic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Basal_transcription_factors

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13921.5Myb_DNA-bind_6404462

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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