PH01000619G0080's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase family protein, expressed
Blast result AT1G17110 : 2.70E-99
Blast annotation: ubiquitin-specific protease 15
2.Location
Scaffold: PH01000619
Strand: +
| Region | Start | End |
| gene | 59271 | 71351 |
| mRNA | 59271 | 71351 |
| exon | 59271 | 64225 |
| exon | 64681 | 65071 |
| exon | 65150 | 65441 |
| exon | 65625 | 65779 |
| exon | 65826 | 65962 |
| exon | 67741 | 67864 |
| exon | 68078 | 68235 |
| exon | 68318 | 68402 |
| exon | 68785 | 68997 |
| exon | 69871 | 69932 |
| exon | 70026 | 70514 |
| exon | 71119 | 71351 |
| CDS | 64071 | 64225 |
| CDS | 64681 | 65071 |
| CDS | 65150 | 65441 |
| CDS | 65625 | 65779 |
| CDS | 65826 | 65962 |
| CDS | 67741 | 67864 |
| CDS | 68078 | 68235 |
| CDS | 68318 | 68402 |
| CDS | 68785 | 68997 |
| CDS | 69871 | 69932 |
| CDS | 70026 | 70514 |
| CDS | 71119 | 71143 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01753.17 | zf-MYND | 32 | 69 |
| PF00443.28 | UCH | 396 | 589 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.