Annotation of co-expression genes

PH01000621G0810's details annotation

1.Annotation

ICBR annotation: bZIP transcription factor domain containing protein, expressed

Blast result AT1G19490 : 9.90E-20
Blast annotation: Basic-leucine zipper (bZIP) transcription factor family protein

2.Location

Scaffold: PH01000621
Strand: +

RegionStartEnd
gene519099521303
mRNA519099521303
exon519099520004
exon520125520313
exon520405520482
exon520569520634
exon520762521303
CDS519921520004
CDS520125520313
CDS520405520482
CDS520569520634
CDS520762520857

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000171bZIP Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000219TKL-Pl-6 (from iTAK)
potassium_ion_transmembrane_transport
bZIP Transcription_Regulator(from PlantTFDB)
GH36 Glycoside_Hydrolases
potassium ion transmembrane transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)bZIP
Transcription_Regulator(from PlantTFDB)bZIP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00170.20bZIP_193155

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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