PH01000622G0210's details annotation
1.Annotation
ICBR annotation: LSM domain containing protein, expressed
Blast result AT3G62840 : 8.20E-52
Blast annotation: Small nuclear ribonucleoprotein family protein
2.Location
Scaffold: PH01000622
Strand: -
| Region | Start | End |
| gene | 171743 | 174385 |
| mRNA | 171743 | 174385 |
| exon | 171743 | 172107 |
| exon | 172192 | 172296 |
| exon | 173423 | 173497 |
| exon | 173644 | 174385 |
| CDS | 171991 | 172107 |
| CDS | 172192 | 172296 |
| CDS | 173423 | 173497 |
| CDS | 173644 | 173661 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01423.21 | LSM | 25 | 99 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | small nuclear ribonucleoprotein D2 | ko03041 | K11096 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008380 | RNA splicing |
| GO:0030532 | small nuclear ribonucleoprotein complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.