PH01000622G0570's details annotation
1.Annotation
ICBR annotation: xylem cysteine proteinase 2 precursor, putative, expressed
Blast result AT4G35350 : 3.30E-92
Blast annotation: xylem cysteine peptidase 1
2.Location
Scaffold: PH01000622
Strand: +
| Region | Start | End |
| gene | 418367 | 420242 |
| mRNA | 418367 | 420242 |
| exon | 418367 | 418657 |
| exon | 418698 | 418891 |
| exon | 419091 | 419326 |
| exon | 419471 | 419601 |
| exon | 419768 | 420242 |
| CDS | 418458 | 418657 |
| CDS | 418698 | 418891 |
| CDS | 419091 | 419326 |
| CDS | 419471 | 419601 |
| CDS | 419768 | 419987 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08246.11 | Inhibitor_I29 | 47 | 92 |
| PF00112.22 | Peptidase_C1 | 129 | 325 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008234 | cysteine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.