PH01000623G0440's details annotation
1.Annotation
ICBR annotation: auxin response factor, putative, expressed
Blast result AT1G19220 : 1.00E-158
Blast annotation: auxin response factor 19
2.Location
Scaffold: PH01000623
Strand: +
| Region | Start | End |
| gene | 287209 | 295699 |
| mRNA | 287209 | 295699 |
| exon | 287209 | 287705 |
| exon | 287836 | 287907 |
| exon | 288828 | 288926 |
| exon | 289046 | 289102 |
| exon | 289190 | 289354 |
| exon | 289442 | 289526 |
| exon | 289971 | 290061 |
| exon | 290288 | 290371 |
| exon | 290461 | 290583 |
| exon | 290815 | 290890 |
| exon | 290979 | 291117 |
| exon | 291299 | 293127 |
| exon | 293513 | 293703 |
| exon | 294748 | 295699 |
| CDS | 287541 | 287705 |
| CDS | 287836 | 287907 |
| CDS | 288828 | 288926 |
| CDS | 289046 | 289102 |
| CDS | 289190 | 289354 |
| CDS | 289442 | 289526 |
| CDS | 289971 | 290061 |
| CDS | 290288 | 290371 |
| CDS | 290461 | 290583 |
| CDS | 290815 | 290890 |
| CDS | 290979 | 291117 |
| CDS | 291299 | 293127 |
| CDS | 293513 | 293703 |
| CDS | 294748 | 295132 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 157 | 244 |
| PF06507.12 | Auxin_resp | 256 | 339 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.