PH01000624G0340's details annotation
1.Annotation
ICBR annotation: DUF292 domain containing protein, expressed
Blast result AT1G34220 : 1.90E-90
Blast annotation: Regulator of Vps4 activity in the MVB pathway protein
2.Location
Scaffold: PH01000624
Strand: -
| Region | Start | End |
| gene | 197677 | 200860 |
| mRNA | 197677 | 200860 |
| exon | 197677 | 198872 |
| exon | 198950 | 199126 |
| exon | 199180 | 199351 |
| exon | 200273 | 200376 |
| exon | 200495 | 200627 |
| exon | 200750 | 200860 |
| CDS | 197931 | 198872 |
| CDS | 198950 | 199126 |
| CDS | 199180 | 199351 |
| CDS | 200273 | 200376 |
| CDS | 200495 | 200627 |
| CDS | 200750 | 200805 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000554 | EIL Transcription_Regulator(from PlantTFDB) GT20 GlycosylTransferases STE_STE11 (from iTAK) PHD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03398.13 | Ist1 | 20 | 196 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.