PH01000625G0180's details annotation
1.Annotation
ICBR annotation: decarboxylase, putative, expressed
Blast result AT2G02010 : 6.80E-73
Blast annotation: glutamate decarboxylase 4
2.Location
Scaffold: PH01000625
Strand: -
| Region | Start | End |
| gene | 123884 | 128111 |
| mRNA | 123884 | 128111 |
| exon | 123884 | 124373 |
| exon | 124570 | 124712 |
| exon | 125084 | 125298 |
| exon | 125389 | 125480 |
| exon | 126721 | 128111 |
| CDS | 124216 | 124373 |
| CDS | 124570 | 124712 |
| CDS | 125084 | 125298 |
| CDS | 125389 | 125480 |
| CDS | 126721 | 127027 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00282.18 | Pyridoxal_deC | 91 | 259 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004351 | glutamate decarboxylase activity |
| GO:0006536 | glutamate metabolic process |
| GO:0016831 | carboxy-lyase activity |
| GO:0019752 | carboxylic acid metabolic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.