PH01000625G0220's details annotation
1.Annotation
ICBR annotation: oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
Blast result AT5G10050 : 6.00E-88
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000625
Strand: +
| Region | Start | End |
| gene | 144299 | 147779 |
| mRNA | 144299 | 147779 |
| exon | 144299 | 145349 |
| exon | 146314 | 146473 |
| exon | 147027 | 147779 |
| CDS | 144989 | 145349 |
| CDS | 146314 | 146473 |
| CDS | 147027 | 147363 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00106.24 | adh_short | 16 | 202 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.