PH01000626G0040's details annotation
1.Annotation
ICBR annotation: auxin response factor 1, putative, expressed
Blast result AT4G23980 : 2.00E-160
Blast annotation: auxin response factor 9
2.Location
Scaffold: PH01000626
Strand: -
| Region | Start | End |
| gene | 28183 | 33478 |
| mRNA | 28183 | 33478 |
| exon | 28183 | 28547 |
| exon | 28647 | 28825 |
| exon | 28906 | 29549 |
| exon | 29646 | 29811 |
| exon | 29895 | 29967 |
| exon | 30074 | 30193 |
| exon | 30268 | 30432 |
| exon | 30555 | 30645 |
| exon | 30785 | 30869 |
| exon | 30947 | 31102 |
| exon | 31358 | 31414 |
| exon | 31511 | 31609 |
| exon | 31745 | 31857 |
| exon | 31950 | 33478 |
| CDS | 28424 | 28547 |
| CDS | 28647 | 28825 |
| CDS | 28906 | 29549 |
| CDS | 29646 | 29811 |
| CDS | 29895 | 29967 |
| CDS | 30074 | 30193 |
| CDS | 30268 | 30432 |
| CDS | 30555 | 30645 |
| CDS | 30785 | 30869 |
| CDS | 30947 | 31102 |
| CDS | 31358 | 31414 |
| CDS | 31511 | 31609 |
| CDS | 31745 | 31857 |
| CDS | 31950 | 31959 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 116 | 216 |
| PF06507.12 | Auxin_resp | 242 | 323 |
| PF02309.15 | AUX_IAA | 581 | 625 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.