Annotation of co-expression genes

PH01000629G0150's details annotation

1.Annotation

ICBR annotation: DRD1, putative, expressed

Blast result AT2G16390 : 0.00E+00
Blast annotation: SNF2 domain-containing protein / helicase domain-containing protein

2.Location

Scaffold: PH01000629
Strand: +

RegionStartEnd
gene8819092729
mRNA8819092729
exon8819089673
exon9030392729
CDS8960589673
CDS9030392063

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000495SNF2 Transcription_Regulator(from iTAK)
proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
ribosome biogenesis,
eukaryotic translation initiation factor 3 complex,
nucleolus,
helicase activity,
coexpression networkCFinderM001522SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
coexpression networkCFinderM001739mannose biosynthetic process,
phosphomannomutase activity,
ARF Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
B3-ARF Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SNF2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00176.22SNF2_N74357
PF00271.30Helicase_C419532

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0004386helicase activity
GO:0005524ATP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.