PH01000629G0230's details annotation
1.Annotation
ICBR annotation: G-patch domain containing protein, expressed
Blast result AT3G09850 : 1.90E-92
Blast annotation: D111/G-patch domain-containing protein
2.Location
Scaffold: PH01000629
Strand: +
| Region | Start | End |
| gene | 158134 | 164934 |
| mRNA | 158134 | 164934 |
| exon | 158134 | 159627 |
| exon | 160648 | 160739 |
| exon | 160922 | 160996 |
| exon | 161571 | 161645 |
| exon | 161956 | 162017 |
| exon | 163066 | 163135 |
| exon | 163510 | 164934 |
| CDS | 158439 | 159627 |
| CDS | 160648 | 160739 |
| CDS | 160922 | 160996 |
| CDS | 161571 | 161645 |
| CDS | 161956 | 162017 |
| CDS | 163066 | 163135 |
| CDS | 163510 | 164226 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000285 | ABC_transporters |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01424.21 | R3H | 445 | 503 |
| PF01585.22 | G-patch | 620 | 664 |
| PF01585.22 | G-patch | 711 | 754 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.