PH01000632G0450's details annotation
1.Annotation
ICBR annotation: RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed
Blast result AT3G52630 : 8.30E-28
Blast annotation: Nucleic acid-binding, OB-fold-like protein
2.Location
Scaffold: PH01000632
Strand: -
| Region | Start | End |
| gene | 315384 | 316372 |
| mRNA | 315384 | 316372 |
| exon | 315384 | 315731 |
| exon | 315997 | 316372 |
| CDS | 315637 | 315731 |
| CDS | 315997 | 316252 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08661.10 | Rep_fac-A_3 | 1 | 99 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| DNA replication | replication factor A3 | ko03030 | K10740 |
| Nucleotide excision repair | replication factor A3 | ko03420 | K10740 |
| Mismatch repair | replication factor A3 | ko03430 | K10740 |
| Homologous recombination | replication factor A3 | ko03440 | K10740 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.