PH01000632G0580's details annotation
1.Annotation
ICBR annotation: lissencephaly type-1-like homology motif, putative, expressed
Blast result AT3G16830 : 0.00E+00
Blast annotation: TOPLESS-related 2
2.Location
Scaffold: PH01000632
Strand: -
| Region | Start | End |
| gene | 411012 | 422672 |
| mRNA | 411012 | 422672 |
| exon | 411012 | 411457 |
| exon | 412564 | 412739 |
| exon | 412812 | 412994 |
| exon | 413192 | 413287 |
| exon | 413375 | 413503 |
| exon | 413577 | 413801 |
| exon | 413837 | 413947 |
| exon | 414028 | 414183 |
| exon | 414292 | 414387 |
| exon | 414478 | 414645 |
| exon | 414721 | 414955 |
| exon | 415144 | 415271 |
| exon | 415535 | 415627 |
| exon | 415709 | 415804 |
| exon | 415928 | 416001 |
| exon | 416084 | 416153 |
| exon | 416277 | 416386 |
| exon | 416538 | 416673 |
| exon | 416756 | 416856 |
| exon | 417744 | 417864 |
| exon | 417949 | 418123 |
| exon | 418242 | 418400 |
| exon | 419166 | 419279 |
| exon | 419407 | 419586 |
| exon | 420804 | 422672 |
| CDS | 411241 | 411457 |
| CDS | 412564 | 412739 |
| CDS | 412812 | 412994 |
| CDS | 413192 | 413287 |
| CDS | 413375 | 413503 |
| CDS | 413577 | 413801 |
| CDS | 413837 | 413947 |
| CDS | 414028 | 414183 |
| CDS | 414292 | 414387 |
| CDS | 414478 | 414645 |
| CDS | 414721 | 414955 |
| CDS | 415144 | 415271 |
| CDS | 415535 | 415627 |
| CDS | 415709 | 415804 |
| CDS | 415928 | 416001 |
| CDS | 416084 | 416153 |
| CDS | 416277 | 416386 |
| CDS | 416538 | 416673 |
| CDS | 416756 | 416856 |
| CDS | 417744 | 417864 |
| CDS | 417949 | 418123 |
| CDS | 418242 | 418400 |
| CDS | 419166 | 419279 |
| CDS | 419407 | 419586 |
| CDS | 420804 | 420883 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 439 | 475 |
| PF00400.31 | WD40 | 923 | 955 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.