PH01000632G0810's details annotation
1.Annotation
ICBR annotation: syntaxin, putative, expressed
Blast result AT5G46860 : 5.20E-58
Blast annotation: Syntaxin/t-SNARE family protein
2.Location
Scaffold: PH01000632
Strand: -
| Region | Start | End |
| gene | 573806 | 579357 |
| mRNA | 573806 | 579357 |
| exon | 573806 | 574484 |
| exon | 574728 | 574828 |
| exon | 574944 | 575101 |
| exon | 575344 | 575418 |
| exon | 576661 | 576800 |
| exon | 576964 | 579357 |
| CDS | 574431 | 574484 |
| CDS | 574728 | 574828 |
| CDS | 574944 | 575101 |
| CDS | 575344 | 575418 |
| CDS | 576661 | 576800 |
| CDS | 576964 | 577020 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14523.5 | Syntaxin_2 | 8 | 54 |
| PF05739.18 | SNARE | 142 | 177 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| SNARE interactions in vesicular transport | syntaxin 7 | ko04130 | K08488 |
| Phagosome | syntaxin 7 | ko04145 | K08488 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005484 | SNAP receptor activity |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0016020 | membrane |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.