PH01000633G0150's details annotation
1.Annotation
ICBR annotation: esterase/lipase/thioesterase, putative, expressed
Blast result AT1G29840 : 3.30E-77
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000633
Strand: -
| Region | Start | End |
| gene | 130458 | 135085 |
| mRNA | 130458 | 135085 |
| exon | 130458 | 130864 |
| exon | 130968 | 131142 |
| exon | 131369 | 131462 |
| exon | 131583 | 131747 |
| exon | 132430 | 132579 |
| exon | 133192 | 133313 |
| exon | 133706 | 133788 |
| exon | 133927 | 134045 |
| exon | 134638 | 135085 |
| CDS | 130832 | 130864 |
| CDS | 130968 | 131142 |
| CDS | 131369 | 131462 |
| CDS | 131583 | 131747 |
| CDS | 132430 | 132579 |
| CDS | 133192 | 133313 |
| CDS | 133706 | 133788 |
| CDS | 133927 | 134045 |
| CDS | 134638 | 134680 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000566 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, ubiquitin-dependent protein catabolic process, peroxisome organization, integral_component_of_peroxisomal_membrane PHD Transcription_Regulator(from iTAK) bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12146.7 | Hydrolase_4 | 41 | 297 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.