PH01000634G0070's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G65270 : 3.40E-73
Blast annotation: -
2.Location
Scaffold: PH01000634
Strand: -
| Region | Start | End |
| gene | 56414 | 61319 |
| mRNA | 56414 | 61319 |
| exon | 56414 | 56924 |
| exon | 57045 | 57135 |
| exon | 57323 | 57381 |
| exon | 57801 | 57872 |
| exon | 58488 | 58535 |
| exon | 58886 | 58981 |
| exon | 59064 | 59126 |
| exon | 60501 | 61319 |
| CDS | 56787 | 56924 |
| CDS | 57045 | 57135 |
| CDS | 57323 | 57381 |
| CDS | 57801 | 57872 |
| CDS | 58488 | 58535 |
| CDS | 58886 | 58981 |
| CDS | 59064 | 59126 |
| CDS | 60501 | 60815 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001789 | proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, C3H Transcription_Regulator(from PlantTFDB) ATP hydrolysis coupled proton transport, DNA repair, nuclease activity, endonuclease activity, hydrogen ion transmembrane transporter activity, |
| coexpression network | CFinderM001870 | Basal_transcription_factors SNF2 Transcription_Regulator(from iTAK) transferase activity, transferring pentosyl groups, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.