Annotation of co-expression genes

PH01000634G0180's details annotation

1.Annotation

ICBR annotation: SNF2 family N-terminal domain containing protein, expressed

Blast result AT5G66750 : 0.00E+00
Blast annotation: chromatin remodeling 1

2.Location

Scaffold: PH01000634
Strand: +

RegionStartEnd
gene152886160740
mRNA152886160740
exon152886153902
exon154062154535
exon154931155029
exon155478155824
exon155893156079
exon156173156348
exon157650157906
exon158005158109
exon158201158295
exon158420158539
exon158584158649
exon159038159178
exon159410159508
exon159588159710
exon159853160740
CDS153810153902
CDS154062154535
CDS154931155029
CDS155478155824
CDS155893156079
CDS156173156348
CDS157650157906
CDS158005158109
CDS158201158295
CDS158420158539
CDS158584158649
CDS159038159178
CDS159410159508
CDS159588159710
CDS159853160080

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000638Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
B3 Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
coexpression networkCFinderM001592DNA_ligation_involved_in_DNA_repair
DNA_ligase_activity
DNA ligase (ATP) activity,
regulation_of_cell_cycle
DNA recombination,
C3H Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Mismatch_repair
Base_excision_repair
Nucleotide_excision_repair
DNA_replication
DNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SNF2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00176.22SNF2_N277571
PF00271.30Helicase_C599736

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0004386helicase activity
GO:0005524ATP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.