Annotation of co-expression genes

PH01000637G0050's details annotation

1.Annotation

ICBR annotation: T-complex protein, putative, expressed

Blast result AT3G03960 : 0.00E+00
Blast annotation: TCP-1/cpn60 chaperonin family protein

2.Location

Scaffold: PH01000637
Strand: -

RegionStartEnd
gene3978549131
mRNA3978549131
exon3978542036
exon4216842341
exon4353043587
exon4388244091
exon4454544639
exon4475744879
exon4495545032
exon4511445186
exon4544845581
exon4639146468
exon4736747528
exon4763047776
exon4786848130
exon4882649131
CDS4167142036
CDS4216842341
CDS4353043587
CDS4388244091
CDS4454544639
CDS4475744879
CDS4495545032
CDS4511445186
CDS4544845581
CDS4639146468
CDS4736747528
CDS4763047776
CDS4786848130
CDS4882648979

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00118.23Cpn60_TCP140526
PF03108.14DBD_Tnp_Mut642700

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0006457protein folding
GO:0044267cellular protein metabolic process
GO:0051082unfolded protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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