PH01000637G0310's details annotation
1.Annotation
ICBR annotation: OsFBO15 - F-box and other domain containing protein, expressed
Blast result AT5G06550 : 5.00E-136
Blast annotation: -
2.Location
Scaffold: PH01000637
Strand: +
| Region | Start | End |
| gene | 259890 | 264017 |
| mRNA | 259890 | 264017 |
| exon | 259890 | 261293 |
| exon | 262198 | 262569 |
| exon | 263285 | 264017 |
| CDS | 260011 | 261293 |
| CDS | 262198 | 262569 |
| CDS | 263285 | 263528 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Jumonji |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12937.6 | F-box-like | 92 | 134 |
| PF13621.5 | Cupin_8 | 207 | 428 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.