Annotation of co-expression genes

PH01000639G0210's details annotation

1.Annotation

ICBR annotation: arginine N-methyltransferase 7, putative, expressed

Blast result AT4G16570 : 2.00E-158
Blast annotation: protein arginine methyltransferase 7

2.Location

Scaffold: PH01000639
Strand: +

RegionStartEnd
gene156891164584
mRNA156891164584
exon156891157156
exon158140158431
exon158901159026
exon159135159299
exon159369159487
exon159559159585
exon160032160134
exon160501160629
exon161075161311
exon161416161489
exon163111163204
exon163312163461
exon163545163619
exon164174164270
exon164529164584
CDS157071157156
CDS158140158431
CDS158901159026
CDS159135159299
CDS159369159487
CDS159559159585
CDS160032160134
CDS160501160629
CDS161075161311
CDS161416161489
CDS163111163204
CDS163312163461
CDS163545163619
CDS164174164270
CDS164529164575

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000906HSF Transcription_Regulator(from PlantTFDB)
protein ADP-ribosylation,
dephosphorylation,
protein methylation,
Base_excision_repair
coexpression networkCFinderM001342
coexpression networkCFinderM001539protein methylation,
coexpression networkCFinderM001575protein methylation,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
methyltransferase activity,
coexpression networkCFinderM001726methyltransferase activity,
fucosyltransferase_activity
DNA methylation,
protein methylation,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
membrane,
protein glycosylation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006479protein methylation
GO:0008168methyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.