PH01000639G0510's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G01290 : 1.00E-81
Blast annotation: -
2.Location
Scaffold: PH01000639
Strand: -
| Region | Start | End |
| gene | 325077 | 333815 |
| mRNA | 325077 | 333815 |
| exon | 325077 | 325829 |
| exon | 326432 | 327949 |
| exon | 328214 | 328298 |
| exon | 328928 | 329302 |
| exon | 329725 | 330231 |
| exon | 330334 | 330515 |
| exon | 330894 | 331090 |
| exon | 331182 | 331283 |
| exon | 331757 | 331835 |
| exon | 332230 | 333815 |
| CDS | 325666 | 325829 |
| CDS | 326432 | 327949 |
| CDS | 328214 | 328298 |
| CDS | 328928 | 329302 |
| CDS | 329725 | 330231 |
| CDS | 330334 | 330515 |
| CDS | 330894 | 331090 |
| CDS | 331182 | 331283 |
| CDS | 331757 | 331835 |
| CDS | 332230 | 332377 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000316 | RLK-Pelle_RLCK-IV (from iTAK) AGC_NDR (from iTAK) Jumonji Transcription_Regulator(from iTAK) signal transducer activity, |
| coexpression network | CFinderM000569 | CMGC_Pl-Tthe (from iTAK) 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, membrane, Regulation_of_autophagy |
| coexpression network | CFinderM001123 | 1,3-beta-D-glucan synthase activity, (1->3)-beta-D-glucan biosynthetic process, 1,3-beta-D-glucan synthase complex, RNA-dependent DNA replication, membrane, RNA-directed DNA polymerase activity, |
| coexpression network | CFinderM001124 | AGC_NDR (from iTAK) Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.