PH01000640G0460's details annotation
1.Annotation
ICBR annotation: nucleoside transporter, putative, expressed
Blast result AT4G05120 : 1.90E-68
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000640
Strand: -
| Region | Start | End |
| gene | 323747 | 332756 |
| mRNA | 323747 | 332756 |
| exon | 323747 | 323888 |
| exon | 323975 | 324257 |
| exon | 324370 | 324530 |
| exon | 326727 | 326831 |
| exon | 326950 | 327006 |
| exon | 329130 | 329499 |
| exon | 330782 | 330875 |
| exon | 331909 | 332756 |
| CDS | 323781 | 323888 |
| CDS | 323975 | 324257 |
| CDS | 324370 | 324530 |
| CDS | 326727 | 326831 |
| CDS | 326950 | 327006 |
| CDS | 329130 | 329499 |
| CDS | 330782 | 330875 |
| CDS | 331909 | 332167 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000309 | malate_transport nucleoside transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01733.17 | Nucleoside_tran | 301 | 472 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005337 | nucleoside transmembrane transporter activity |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.