PH01000642G0510's details annotation
1.Annotation
ICBR annotation: GHMP kinases ATP-binding protein, putative
Blast result AT2G17265 : 4.20E-98
Blast annotation: homoserine kinase
2.Location
Scaffold: PH01000642
Strand: +
| Region | Start | End |
| gene | 304653 | 306182 |
| mRNA | 304653 | 306182 |
| exon | 304653 | 306182 |
| CDS | 304913 | 306031 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00288.25 | GHMP_kinases_N | 138 | 203 |
| PF08544.12 | GHMP_kinases_C | 266 | 342 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 265 Glycine, serine and threonine metabolism | homoserine kinase [EC:2.7.1.39] | K00872 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004413 | homoserine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006566 | threonine metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.