PH01000643G0180's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT1G26460 : 4.00E-157
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000643
Strand: -
| Region | Start | End |
| gene | 99254 | 105270 |
| mRNA | 99254 | 105270 |
| exon | 99254 | 99876 |
| exon | 99937 | 100074 |
| exon | 100194 | 100400 |
| exon | 101834 | 101961 |
| exon | 102607 | 103111 |
| exon | 103322 | 103538 |
| exon | 104182 | 105270 |
| CDS | 99694 | 99876 |
| CDS | 99937 | 100074 |
| CDS | 100194 | 100400 |
| CDS | 101834 | 101961 |
| CDS | 102607 | 103111 |
| CDS | 103322 | 103538 |
| CDS | 104182 | 104531 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 129 | 157 |
| PF13812.5 | PPR_3 | 355 | 397 |
| PF13041.5 | PPR_2 | 452 | 497 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.