PH01000650G0430's details annotation
1.Annotation
ICBR annotation: zinc finger protein, putative, expressed
Blast result AT2G17900 : 7.70E-40
Blast annotation: SET domain group 37
2.Location
Scaffold: PH01000650
Strand: +
| Region | Start | End |
| gene | 359556 | 363030 |
| mRNA | 359556 | 363030 |
| exon | 359556 | 359666 |
| exon | 361091 | 361182 |
| exon | 361281 | 361362 |
| exon | 361482 | 361580 |
| exon | 361686 | 361764 |
| exon | 361921 | 361973 |
| exon | 362747 | 363030 |
| CDS | 359628 | 359666 |
| CDS | 361091 | 361182 |
| CDS | 361281 | 361362 |
| CDS | 361482 | 361580 |
| CDS | 361686 | 361764 |
| CDS | 361921 | 361973 |
| CDS | 362747 | 362857 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001252 | SET Transcription_Regulator(from iTAK) eukaryotic translation initiation factor 3 complex, RNA_transport protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00856.27 | SET | 19 | 76 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.