PH01000650G0610's details annotation
1.Annotation
ICBR annotation: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Blast result AT5G10290 : 1.20E-44
Blast annotation: leucine-rich repeat transmembrane protein kinase family protein
2.Location
Scaffold: PH01000650
Strand: +
| Region | Start | End |
| gene | 458827 | 463198 |
| mRNA | 458827 | 463198 |
| exon | 458827 | 459579 |
| exon | 459845 | 460084 |
| exon | 461086 | 461218 |
| exon | 461985 | 462056 |
| exon | 462279 | 462422 |
| exon | 462506 | 462577 |
| exon | 462972 | 463198 |
| CDS | 459549 | 459579 |
| CDS | 459845 | 460084 |
| CDS | 461086 | 461218 |
| CDS | 461985 | 462056 |
| CDS | 462279 | 462422 |
| CDS | 462506 | 462577 |
| CDS | 462972 | 462981 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 91 | 127 |
| PF13855.5 | LRR_8 | 179 | 231 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.