PH01000651G0650's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT1G04140 : 2.00E-141
Blast annotation: Transducin family protein / WD-40 repeat family protein
2.Location
Scaffold: PH01000651
Strand: -
| Region | Start | End |
| gene | 506831 | 517592 |
| mRNA | 506831 | 517592 |
| exon | 506831 | 509254 |
| exon | 509552 | 509929 |
| exon | 511106 | 511192 |
| exon | 511266 | 511379 |
| exon | 511579 | 511692 |
| exon | 512239 | 512299 |
| exon | 512400 | 512603 |
| exon | 512952 | 514087 |
| exon | 514174 | 514299 |
| exon | 514440 | 514507 |
| exon | 515763 | 515879 |
| exon | 516095 | 516158 |
| exon | 516390 | 517592 |
| CDS | 508937 | 509254 |
| CDS | 509552 | 509929 |
| CDS | 511106 | 511192 |
| CDS | 511266 | 511379 |
| CDS | 511579 | 511692 |
| CDS | 512239 | 512299 |
| CDS | 512400 | 512603 |
| CDS | 512952 | 514087 |
| CDS | 514174 | 514299 |
| CDS | 514440 | 514507 |
| CDS | 515763 | 515879 |
| CDS | 516095 | 516158 |
| CDS | 516390 | 516425 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000479 | pantothenate biosynthetic process, pantoate-beta-alanine ligase activity, Rab GDP-dissociation inhibitor activity, beta-Alanine_metabolism Pantothenate_and_CoA_biosynthesis protein transport, |
| coexpression network | CFinderM000673 | Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Glutathione_metabolism |
| coexpression network | CFinderM000674 | acetylglucosaminyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.