PH01000662G0600's details annotation
1.Annotation
ICBR annotation: ATP synthase F1, delta subunit family protein, putative, expressed
Blast result AT5G13450 : 3.90E-58
Blast annotation: delta subunit of Mt ATP synthase
2.Location
Scaffold: PH01000662
Strand: -
| Region | Start | End |
| gene | 379037 | 382401 |
| mRNA | 379037 | 382401 |
| exon | 379037 | 379251 |
| exon | 379322 | 379408 |
| exon | 380268 | 380380 |
| exon | 380816 | 381059 |
| exon | 381688 | 381741 |
| exon | 381967 | 382401 |
| CDS | 379132 | 379251 |
| CDS | 379322 | 379408 |
| CDS | 380268 | 380380 |
| CDS | 380816 | 381059 |
| CDS | 381688 | 381741 |
| CDS | 381967 | 382047 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000962 | 6-phosphofructokinase complex, 6-phosphofructokinase activity, glycolysis, translation_initiation_factor_binding diphosphate-fructose-6-phosphate 1-phosphotransferase activity, eukaryotic translation initiation factor 3 complex, fructose_6-phosphate_metabolic_process translational initiation, ATP synthesis coupled proton transport, hydrogen ion transporting ATP synthase activity, rotational mechanism, Oxidative_phosphorylation RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00213.17 | OSCP | 55 | 224 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | F-type H+-transporting ATPase oligomycin sensitivity conferralprotein[EC:3.6.3.14] | ko00190 | K02137 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015986 | ATP synthesis coupled proton transport |
| GO:0016020 | membrane |
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.