PH01000662G0760's details annotation
1.Annotation
ICBR annotation: nuclear matrix constituent protein 1-like, putative, expressed
Blast result AT1G67230 : 1.00E-147
Blast annotation: little nuclei1
2.Location
Scaffold: PH01000662
Strand: -
| Region | Start | End |
| gene | 503462 | 510792 |
| mRNA | 503462 | 510792 |
| exon | 503462 | 504550 |
| exon | 504736 | 504919 |
| exon | 505027 | 507131 |
| exon | 507684 | 507767 |
| exon | 507874 | 508144 |
| exon | 508236 | 508489 |
| exon | 508959 | 509168 |
| exon | 509921 | 510792 |
| CDS | 504341 | 504550 |
| CDS | 504736 | 504919 |
| CDS | 505027 | 507131 |
| CDS | 507684 | 507767 |
| CDS | 507874 | 508144 |
| CDS | 508236 | 508489 |
| CDS | 508959 | 509168 |
| CDS | 509921 | 510067 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.