Annotation of co-expression genes

PH01000663G0370's details annotation

1.Annotation

ICBR annotation: glutamate receptor, putative, expressed

Blast result AT2G29120 : 2.00E-167
Blast annotation: glutamate receptor 2.7

2.Location

Scaffold: PH01000663
Strand: -

RegionStartEnd
gene320921327809
mRNA320921327809
exon320921322724
exon323437324144
exon324865326159
exon327218327809
CDS322173322724
CDS323437324144
CDS324865326159
CDS327218327389

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001772Plant_hormone_signal_transduction
outer membrane-bounded periplasmic space,
cytoskeleton,
regulation of actin filament polymerization,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01094.27ANF_receptor57371
PF00497.19SBP_bac_3435755
PF00060.25Lig_chan542789

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004970ionotropic glutamate receptor activity
GO:0005215transporter activity
GO:0005234extracellular-glutamate-gated ion channel activity
GO:0006810transport
GO:0016020membrane
GO:0030288outer membrane-bounded periplasmic space

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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