PH01000664G0200's details annotation
1.Annotation
ICBR annotation: protein of unknown function DUF502 domain containing protein, expressed
Blast result AT1G43130 : 5.60E-77
Blast annotation: like COV 2
2.Location
Scaffold: PH01000664
Strand: +
| Region | Start | End |
| gene | 95559 | 100210 |
| mRNA | 95559 | 100210 |
| exon | 95559 | 96067 |
| exon | 97158 | 97210 |
| exon | 97381 | 97460 |
| exon | 97897 | 98064 |
| exon | 98496 | 98593 |
| exon | 99551 | 99677 |
| exon | 100100 | 100210 |
| CDS | 95948 | 96067 |
| CDS | 97158 | 97210 |
| CDS | 97381 | 97460 |
| CDS | 97897 | 98064 |
| CDS | 98496 | 98593 |
| CDS | 99551 | 99677 |
| CDS | 100100 | 100206 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000716 | Golgi apparatus, clathrin adaptor complex, membrane coat, chromatin binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04367.12 | DUF502 | 90 | 190 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.