PH01000666G0100's details annotation
1.Annotation
ICBR annotation: DEAD/DEAH box helicase domain protein, putative
Blast result AT5G08110 : 0.00E+00
Blast annotation: nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases
2.Location
Scaffold: PH01000666
Strand: +
| Region | Start | End |
| gene | 52132 | 65776 |
| mRNA | 52132 | 65776 |
| exon | 52132 | 52476 |
| exon | 52661 | 53128 |
| exon | 53307 | 53375 |
| exon | 53456 | 53578 |
| exon | 53929 | 54068 |
| exon | 54486 | 54580 |
| exon | 54847 | 54914 |
| exon | 55313 | 55455 |
| exon | 56365 | 56440 |
| exon | 57316 | 57452 |
| exon | 57536 | 57695 |
| exon | 57803 | 57982 |
| exon | 58060 | 58176 |
| exon | 58442 | 58597 |
| exon | 60065 | 60133 |
| exon | 60325 | 60437 |
| exon | 60714 | 60837 |
| exon | 61033 | 61128 |
| exon | 61210 | 61272 |
| exon | 63046 | 65776 |
| CDS | 52318 | 52476 |
| CDS | 52661 | 53128 |
| CDS | 53307 | 53375 |
| CDS | 53456 | 53578 |
| CDS | 53929 | 54068 |
| CDS | 54486 | 54580 |
| CDS | 54847 | 54914 |
| CDS | 55313 | 55455 |
| CDS | 56365 | 56440 |
| CDS | 57316 | 57452 |
| CDS | 57536 | 57695 |
| CDS | 57803 | 57982 |
| CDS | 58060 | 58176 |
| CDS | 58442 | 58597 |
| CDS | 60065 | 60133 |
| CDS | 60325 | 60437 |
| CDS | 60714 | 60837 |
| CDS | 61033 | 61128 |
| CDS | 61210 | 61272 |
| CDS | 63046 | 63627 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001129 | nucleus, double-strand break repair, DNA metabolic process, RNA_polymerase Pyrimidine_metabolism Purine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00271.30 | Helicase_C | 434 | 503 |
| PF09369.9 | DUF1998 | 748 | 830 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.