PH01000668G0290's details annotation
1.Annotation
ICBR annotation: chaperone protein dnaJ, putative, expressed
Blast result AT3G44110 : 1.00E-108
Blast annotation: DNAJ homologue 3
2.Location
Scaffold: PH01000668
Strand: +
| Region | Start | End |
| gene | 177368 | 188928 |
| mRNA | 177368 | 188928 |
| exon | 177368 | 177652 |
| exon | 178119 | 178230 |
| exon | 178705 | 178948 |
| exon | 179871 | 180026 |
| exon | 180633 | 181196 |
| exon | 182941 | 183170 |
| exon | 183321 | 183599 |
| exon | 183761 | 183788 |
| exon | 183979 | 184144 |
| exon | 184628 | 184715 |
| exon | 186115 | 186248 |
| exon | 186358 | 186500 |
| exon | 186667 | 186865 |
| exon | 186992 | 188928 |
| CDS | 177538 | 177652 |
| CDS | 178119 | 178230 |
| CDS | 178705 | 178948 |
| CDS | 179871 | 180026 |
| CDS | 180633 | 181196 |
| CDS | 182941 | 183170 |
| CDS | 183321 | 183599 |
| CDS | 183761 | 183788 |
| CDS | 183979 | 184144 |
| CDS | 184628 | 184715 |
| CDS | 186115 | 186248 |
| CDS | 186358 | 186500 |
| CDS | 186667 | 186865 |
| CDS | 186992 | 187305 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000273 | Lysine_biosynthesis L,L-diaminopimelate_aminotransferase_activity lysine biosynthetic process via diaminopimelate, RLK-Pelle_LRR-Xb-1 (from iTAK) MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 79 | 119 |
| PF14223.5 | Retrotran_gag_2 | 221 | 356 |
| PF00684.18 | DnaJ_CXXCXGXG | 663 | 720 |
| PF01556.17 | DnaJ_C | 712 | 851 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0006457 | protein folding |
| GO:0031072 | heat shock protein binding |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.