PH01000670G0130's details annotation
1.Annotation
ICBR annotation: DEAD-box ATP-dependent RNA helicase, putative, expressed
Blast result AT1G77030 : 2.00E-174
Blast annotation: hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases
2.Location
Scaffold: PH01000670
Strand: +
| Region | Start | End |
| gene | 76483 | 95212 |
| mRNA | 76483 | 95212 |
| exon | 76483 | 77333 |
| exon | 77429 | 77475 |
| exon | 77938 | 78507 |
| exon | 78714 | 79075 |
| exon | 79170 | 79227 |
| exon | 79479 | 79580 |
| exon | 80057 | 80131 |
| exon | 81937 | 81976 |
| exon | 82148 | 82224 |
| exon | 82368 | 82420 |
| exon | 82899 | 82980 |
| exon | 83058 | 83108 |
| exon | 84120 | 84152 |
| exon | 84620 | 84752 |
| exon | 85777 | 85823 |
| exon | 86357 | 86669 |
| exon | 86956 | 87020 |
| exon | 90755 | 90925 |
| exon | 91103 | 91287 |
| exon | 92708 | 92908 |
| exon | 93866 | 95212 |
| CDS | 77132 | 77333 |
| CDS | 77429 | 77475 |
| CDS | 77938 | 78507 |
| CDS | 78714 | 79075 |
| CDS | 79170 | 79227 |
| CDS | 79479 | 79580 |
| CDS | 80057 | 80131 |
| CDS | 81937 | 81976 |
| CDS | 82148 | 82224 |
| CDS | 82368 | 82420 |
| CDS | 82899 | 82980 |
| CDS | 83058 | 83108 |
| CDS | 84120 | 84152 |
| CDS | 84620 | 84752 |
| CDS | 85777 | 85823 |
| CDS | 86357 | 86669 |
| CDS | 86956 | 87020 |
| CDS | 90755 | 90925 |
| CDS | 91103 | 91287 |
| CDS | 92708 | 92908 |
| CDS | 93866 | 94364 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00270.28 | DEAD | 2 | 166 |
| PF08147.11 | DBP10CT | 536 | 607 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
| GO:0005524 | ATP binding |
| GO:0005634 | nucleus |
| GO:0008026 | ATP-dependent helicase activity |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.