PH01000670G0310's details annotation
1.Annotation
ICBR annotation: trehalose-6-phosphate synthase, putative, expressed
Blast result AT1G23870 : 0.00E+00
Blast annotation: trehalose-phosphatase/synthase 9
2.Location
Scaffold: PH01000670
Strand: +
| Region | Start | End |
| gene | 246804 | 250603 |
| mRNA | 246804 | 250603 |
| exon | 246804 | 249354 |
| exon | 249458 | 249731 |
| exon | 249825 | 250603 |
| CDS | 247373 | 249354 |
| CDS | 249458 | 249731 |
| CDS | 249825 | 250157 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT20 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00982.20 | Glyco_transf_20 | 59 | 543 |
| PF02358.15 | Trehalose_PPase | 593 | 826 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15;EC:3.1.3.12] | ko00500 | K16055 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005992 | trehalose biosynthetic process |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.