PH01000674G0170's details annotation
1.Annotation
ICBR annotation: RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
Blast result AT5G18650 : 7.30E-51
Blast annotation: CHY-type/CTCHY-type/RING-type Zinc finger protein
2.Location
Scaffold: PH01000674
Strand: -
| Region | Start | End |
| gene | 129813 | 139483 |
| mRNA | 129813 | 139483 |
| exon | 129813 | 131221 |
| exon | 131688 | 131842 |
| exon | 132516 | 132550 |
| exon | 133505 | 133556 |
| exon | 133808 | 133892 |
| exon | 136408 | 136491 |
| exon | 137263 | 137301 |
| exon | 137661 | 137730 |
| exon | 137847 | 137938 |
| exon | 138008 | 138090 |
| exon | 138762 | 138842 |
| exon | 138880 | 138961 |
| exon | 139045 | 139077 |
| exon | 139423 | 139483 |
| CDS | 131018 | 131221 |
| CDS | 131688 | 131842 |
| CDS | 132516 | 132550 |
| CDS | 133505 | 133556 |
| CDS | 133808 | 133892 |
| CDS | 136408 | 136491 |
| CDS | 137263 | 137301 |
| CDS | 137661 | 137730 |
| CDS | 137847 | 137938 |
| CDS | 138008 | 138090 |
| CDS | 138762 | 138842 |
| CDS | 138880 | 138961 |
| CDS | 139045 | 139077 |
| CDS | 139423 | 139428 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05495.11 | zf-CHY | 2 | 35 |
| PF13639.5 | zf-RING_2 | 89 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.