Annotation of co-expression genes

PH01000677G0200's details annotation

1.Annotation

ICBR annotation: acetyl-CoA carboxylase, putative, expressed

Blast result AT1G36160 : 0.00E+00
Blast annotation: acetyl-CoA carboxylase 1

2.Location

Scaffold: PH01000677
Strand: -

RegionStartEnd
gene116281127186
mRNA116281127186
exon116281116589
exon116695118854
exon118947119126
exon119419119629
exon119731120098
exon120188120425
exon120560120903
exon120984121253
exon121353121475
exon121557121634
exon121732121908
exon121984122073
exon122180122290
exon122493122681
exon122822123013
exon123249123335
exon123436123540
exon123645123701
exon123797123871
exon123969124085
exon124175124299
exon124590124832
exon124919125186
exon125646125741
exon125940126032
exon126201126359
exon126451126657
exon126771127186
CDS116533116589
CDS116695118854
CDS118947119126
CDS119419119629
CDS119731120098
CDS120188120425
CDS120560120903
CDS120984121253
CDS121353121475
CDS121557121634
CDS121732121908
CDS121984122073
CDS122180122290
CDS122493122681
CDS122822123013
CDS123249123335
CDS123436123540
CDS123645123701
CDS123797123871
CDS123969124085
CDS124175124299
CDS124590124832
CDS124919125186
CDS125646125741
CDS125940126032
CDS126201126359
CDS126451126657
CDS126771127118

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001039acetyl-CoA carboxylase activity,
biotin_carboxylase_activity
Fatty_acid_biosynthesis
Propanoate_metabolism
Pyruvate_metabolism
cytokinesis
microtubule cytoskeleton organization,
ligase activity,
microtubule binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00289.21Biotin_carb_N39158
PF02786.16CPSase_L_D2204387
PF02785.18Biotin_carb_C434528
PF00364.21Biotin_lipoyl676732
PF08326.11ACC_central7331483
PF01039.21Carboxyl_trans15882139

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Pyruvate metabolismacetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2;EC:6.3.4.14]ko00620K11262
Propanoate metabolismacetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2;EC:6.3.4.14]ko00640K11262
Fatty acid biosynthesisacetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2;EC:6.3.4.14]ko00061K11262

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0003989acetyl-CoA carboxylase activity
GO:0004075biotin carboxylase activity
GO:0005524ATP binding
GO:0006633fatty acid biosynthetic process
GO:0008152metabolic process
GO:0016874ligase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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