PH01000679G0010's details annotation
1.Annotation
ICBR annotation: transcription factor, putative, expressed
Blast result AT5G10030 : 3.00E-104
Blast annotation: TGACG motif-binding factor 4
2.Location
Scaffold: PH01000679
Strand: -
| Region | Start | End |
| gene | 26430 | 31947 |
| mRNA | 26430 | 31947 |
| exon | 26430 | 27264 |
| exon | 27385 | 27612 |
| exon | 27720 | 27991 |
| exon | 29487 | 29550 |
| exon | 29634 | 29711 |
| exon | 29814 | 29873 |
| exon | 30242 | 31947 |
| CDS | 27100 | 27264 |
| CDS | 27385 | 27612 |
| CDS | 27720 | 27991 |
| CDS | 29487 | 29550 |
| CDS | 29634 | 29711 |
| CDS | 29814 | 29873 |
| CDS | 30242 | 30403 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 54 | 93 |
| PF14144.5 | DOG1 | 141 | 215 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | transcription factor TGA | ko04075 | K14431 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.