PH01000679G0200's details annotation 1.Annotation ICBR annotation: double-strand break repair protein MRE11, putative, expressed
Blast result AT5G54260 : 3.00E-179 Blast annotation: DNA repair and meiosis protein (Mre11) 2.Location Scaffold: PH01000679 Strand: - Region | Start | End | gene | 141771 | 148190 | mRNA | 141771 | 148190 | exon | 141771 | 141892 | exon | 141985 | 142167 | exon | 142291 | 142381 | exon | 142643 | 142861 | exon | 143033 | 143049 | exon | 143127 | 143204 | exon | 143315 | 143428 | exon | 143973 | 144055 | exon | 144208 | 144271 | exon | 144358 | 144420 | exon | 144508 | 144585 | exon | 144697 | 144837 | exon | 144900 | 144962 | exon | 145046 | 145153 | exon | 145242 | 145344 | exon | 145449 | 145540 | exon | 145825 | 145944 | exon | 146056 | 146146 | exon | 146798 | 146901 | exon | 147444 | 147800 | exon | 147915 | 148190 | CDS | 141821 | 141892 | CDS | 141985 | 142167 | CDS | 142291 | 142381 | CDS | 142643 | 142861 | CDS | 143033 | 143049 | CDS | 143127 | 143204 | CDS | 143315 | 143428 | CDS | 143973 | 144055 | CDS | 144208 | 144271 | CDS | 144358 | 144420 | CDS | 144508 | 144585 | CDS | 144697 | 144837 | CDS | 144900 | 144962 | CDS | 145046 | 145153 | CDS | 145242 | 145344 | CDS | 145449 | 145540 | CDS | 145825 | 145944 | CDS | 146056 | 146146 | CDS | 146798 | 146901 | CDS | 147444 | 147800 | CDS | 147915 | 147992 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM000387 | double-strand break repair, DNA metabolic process, endoplasmic reticulum,
| coexpression network | CFinderM001129 | nucleus, double-strand break repair, DNA metabolic process, RNA_polymerase Pyrimidine_metabolism Purine_metabolism
| coexpression network | CFinderM001636 | GPI anchor metabolic process, double-strand break repair, protein folding, nucleus, DNA metabolic process, exonuclease activity, endonuclease activity, phosphoprotein phosphatase activity, manganese ion binding, peptidyl-prolyl cis-trans isomerase activity,
| coexpression network | CFinderM001769 | double-strand break repair, regulation of actin filament polymerization, DNA metabolic process, cytoskeleton, endonuclease activity, exonuclease activity,
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5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family
8.Protein domain Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start | PF00149.27 | Metallophos | 188 | 310 | PF04152.13 | Mre11_DNA_bind | 355 | 532 |
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | null | null | null | null |
10.Gene Ontology GO Accession | GO Annotation | GO:0004519 | endonuclease activity | GO:0004527 | exonuclease activity | GO:0005634 | nucleus | GO:0006259 | DNA metabolic process | GO:0006302 | double-strand break repair | GO:0016787 | hydrolase activity | GO:0030145 | manganese ion binding |
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