PH01000680G0470's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G46220 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01000680
Strand: -
| Region | Start | End |
| gene | 298756 | 308281 |
| mRNA | 298756 | 308281 |
| exon | 298756 | 299159 |
| exon | 299516 | 299608 |
| exon | 300537 | 300599 |
| exon | 300696 | 300773 |
| exon | 301455 | 301518 |
| exon | 301600 | 301646 |
| exon | 302488 | 302553 |
| exon | 302938 | 303027 |
| exon | 303331 | 303399 |
| exon | 303501 | 303566 |
| exon | 303813 | 303967 |
| exon | 304058 | 304499 |
| exon | 304624 | 304680 |
| exon | 304754 | 304847 |
| exon | 305287 | 305390 |
| exon | 305473 | 305538 |
| exon | 305853 | 305927 |
| exon | 306010 | 306075 |
| exon | 306537 | 306803 |
| exon | 306890 | 307201 |
| exon | 307913 | 308281 |
| CDS | 299055 | 299159 |
| CDS | 299516 | 299608 |
| CDS | 300537 | 300599 |
| CDS | 300696 | 300773 |
| CDS | 301455 | 301518 |
| CDS | 301600 | 301646 |
| CDS | 302488 | 302553 |
| CDS | 302938 | 303027 |
| CDS | 303331 | 303399 |
| CDS | 303501 | 303566 |
| CDS | 303813 | 303967 |
| CDS | 304058 | 304499 |
| CDS | 304624 | 304680 |
| CDS | 304754 | 304847 |
| CDS | 305287 | 305390 |
| CDS | 305473 | 305538 |
| CDS | 305853 | 305927 |
| CDS | 306010 | 306075 |
| CDS | 306537 | 306803 |
| CDS | 306890 | 307201 |
| CDS | 307913 | 308086 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001276 | GT8 GlycosylTransferases plant-type cell wall organization, extracellular region, |
| coexpression network | CFinderM001304 | nucleoside-triphosphatase activity, ATPase activity, coupled to transmembrane movement of substances, GT47 GlycosylTransferases RLK-Pelle_CR4L (from iTAK) ABC_transporters ATPase activity, ATP binding, nucleotide binding, SNF2 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09743.8 | E3_UFM1_ligase | 4 | 272 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.