PH01000680G0480's details annotation
1.Annotation
ICBR annotation: hydrolase, NUDIX family, domain containing protein, expressed
Blast result AT3G46200 : 7.30E-62
Blast annotation: nudix hydrolase homolog 9
2.Location
Scaffold: PH01000680
Strand: -
| Region | Start | End |
| gene | 308851 | 313555 |
| mRNA | 308851 | 313555 |
| exon | 308851 | 309066 |
| exon | 309150 | 309425 |
| exon | 309531 | 309668 |
| exon | 310049 | 310107 |
| exon | 310588 | 310646 |
| exon | 310809 | 310891 |
| exon | 311456 | 311512 |
| exon | 311593 | 311686 |
| exon | 312720 | 312875 |
| exon | 313258 | 313555 |
| CDS | 308962 | 309066 |
| CDS | 309150 | 309425 |
| CDS | 309531 | 309668 |
| CDS | 310049 | 310107 |
| CDS | 310588 | 310646 |
| CDS | 310809 | 310891 |
| CDS | 311456 | 311512 |
| CDS | 311593 | 311686 |
| CDS | 312720 | 312875 |
| CDS | 313258 | 313361 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.